Workshops
11 minute read
Upcoming Events
| Date & Time | Location | Instructors | Title and Description | Material |
|---|---|---|---|---|
| Fri Apr 19, 2024 2:00pm - 5:00pm | Hybrid (Campbell Hall Rm 104 and Zoom) | Austin Leong, Emerson Jacobson, Thomas Girke | Part 1: Linux Basics and HPCC Cluster Introduction - HPCC infrastructure overview - Accessing HPCC cluster - Linux basics for cluster usage - File exchange and data management - Intro to file permissions - Data storage under home and bigdata - Software environment modules and running software via Slurm - HPCC Support - Exercises | Agenda and Instruction Material |
| Weds Apr 24, 2024 2:00pm - 5:00pm | Hybrid (Campbell Hall Rm 104 and Zoom) | Austin Leong, Emerson Jacobson, Thomas Girke | Part 2: HPC Cluster Usage and Bash Scripting - Permissions and data sharing - SSH session management and remote file editing - Intro to Bash scripting - sbatch scripts - Debugging Slurm submissions - Parallelization - Intermediate Slurm topics: partitions, node architecture, job submissions, monitoring, and quotas - Slurm array jobs - Exercises | Agenda and Instruction Material |
| Fri Apr 26, 2024 2:00pm - 5:00pm | Hybrid (Campbell Hall Rm 104 and Zoom) | Austin Leong, Emerson Jacobson, Thomas Girke | Part 3: Python Scripting - TBD | Agenda and Instruction Material |
| Fri May 3, 2024 2:00pm - 5:00pm | Hybrid (Campbell Hall Rm 104 and Zoom) | Austin Leong, Emerson Jacobson, Thomas Girke | Part 4: HPCC Software and Services - Open OnDemand web portal - Jupyter, RStudio, VSCode, Desktop via OnDemand - Code management with Git and GitHub - Running scripts and compiling from source - Package management with Conda - Singularity-CE/Apptainer | Agenda and Instruction Material |
Past Events
| Date & Time | Location | Instructors | Title and Description | Material |
|---|---|---|---|---|
| Fri Sept 29, 2023 2:00pm - 5:00pm | Hybrid (Campbell Hall Rm 104 and Zoom) | Austin Leong, Emerson Jacobson, Thomas Girke | Part 3: HPC Software Installs and Basic Scripting 1. Code management with GitHub 2. Running scripts and compiling software from source 3. Installs and package management with Conda 4. Singularity 5. Basic Shell (Python) scripting 6. Exercises | Agenda and Instruction Material |
| Fri Sept 22, 2023 2:00pm - 5:00pm | Hybrid (Campbell Hall Rm 104 and Zoom) | Austin Leong, Emerson Jacobson, Thomas Girke | Part 2: HPC Cluster Usage 1. Permissions and data sharing 2. Software access via module system 3. SSH session management and remote file editing 4. What to consider when parallelizing computing tasks on a cluster? 5. Intermediate Slurm usage: job submissions, monitoring and quotas 6. Exercises | Agenda and Instruction Material |
| Fri Sept 15, 2023 2:00pm - 5:00pm | Hybrid (Campbell Hall Rm 104 and Zoom) | Austin Leong, Emerson Jacobson, Thomas Girke | Part 1: Linux Basics and HPCC Cluster Introduction 1. HPCC infrastructure overview 2. Accessing HPCC cluster 3. Linux basics for cluster usage 4. File exchange and data management 5. Data storage under home and bigdata 6. Navigating and running software via Slurm 7. Exercises | Agenda and Instruction Material |
| Mon March 27 ( 2:00pm - 5:00pm | Hybrid (Genomics 1102A and Zoom) | Austin Leong, Thomas Girke | Part 3: HPC Software Installs and Basic Scripting 1. Code management with GitHub 2. Running scripts and compiling software from source 3. Installs and package management with Conda 4. Singularity 5. Basic Shell (Python) scripting 6. Exercises | Agenda and Material Slides |
| Fri March 17, 2023 2:00pm - 5:00pm | Hybrid (Genomics 1102A and Zoom) | Austin Leong, Tomin Kappiarumalayil, Emerson Jacobson, Thomas Girke | Part 2: HPC Cluster Usage 1. Permissions and data sharing 2. Software access via module system 3. SSH session management and remote file editing 4. What to consider when parallelizing computing tasks on a cluster? 5. Intermediate Slurm usage: job submissions, monitoring and quotas 6. Exercises | Agenda and Material Slides |
| Fri March 3, 2023 2:00pm - 5:00pm | Hybrid (Genomics 1102A and Zoom) | Austin Leong, Tomin Kappiarumalayil, Emerson Jacobson, Thomas Girke | Part 1: Linux Basics and HPCC Cluster Introduction 1. HPCC infrastructure overview 2. Accessing HPCC cluster 3. Linux basics for cluster usage 4. File exchange and data management 5. Data storage under home and bigdata 6. Navigating and running software via Slurm 7. Exercises | Agenda and Material Slides |
| September 2, 2021 10:00am - 11:00am | Virtually via Zoom | Jordan Hayes | Coffee Hour - Conda Installs Topics: 1. Why conda? 2. Configure 3. Install Examples | Slides Zoom |
| June 14, 2021 10:00am - 11:00am | Virtually via Zoom | Viet Pham | Coffee Hour - Remote Editing Topics: 1. Linux filesystems 2. Basic Linux navigation 3. Remote editing | Slides Zoom |
| December 18, 2020 1:00pm - 4:30pm | Virtually via Zoom | Jordan Hayes, Melody Asghari, Isaac Salinas, Abraham Park & Thomas Girke | Introduction to HPCC’s Cluster Usage Topics: 1. HPCC Infrastructure (Slides) 2. Linux Basics for HPC (Slides A, Slides B) 3. Cluster Usage (Slides) 4. Special Topic: R on HPC (Slides) 5. Special Topic: R Use Case from Statistics (Slides) | Agenda Video Recordings |
| April 15, 2020 2:45pm - 5:00pm | Virtually via Zoom | Abraham Park, Travis Nasser, Jordan Hayes | Intro to HPCC This workshop will cover topics including: * The cluster scheduler, Slurm * Cluster policies and best practices * Basic job submissions to the cluster * and others .. | HPCC Intro Basics: Slides Video |
| April 14, 2020 12:15pm - 2:15pm | Virtually via Zoom | Travis Nasser, Abraham Park, Jordan Hayes | Intro to Linux This workshop will cover topics including: * Basic Linux commands * Linux File systems * Creating Scripts | Linux Intro Basics: Slides Video |
| January 29, 2020 1:00pm - 3:15pm | Genomics Bldg Auditorium 1102A | Jordan Hayes | Intro to HPCC This workshop will cover topics including: * The cluster scheduler, Slurm * Cluster policies and best practices * Basic job submissions to the cluster * and others .. | HPCC Intro Basics: Slides |
| January 27, 2020 1:30pm - 3:15pm | Genomics Bldg Auditorium 1102A | Abraham Park | Intro to Linux This workshop will cover topics including: * Basic Linux commands * Linux File systems * Creating Scripts | Linux Intro Basics: Slides |
| November 7, 2019 1:00pm - 3:00pm | Genomics Bldg Auditorium 1102A | Jordan Hayes & Abraham Park | Intro to Linux and HPCC This workshop will cover topics including: * Connecting to the Cluster * Basic Linux commands * File systems * The cluster scheduler, Slurm * Cluster policies and best practices * Basic job submissions to the cluster * and others .. | Linux Intro Basics: Slides HPCC Intro Basics: Slides |
| June 17, 2019 2:00pm - 5:00pm | Genomics Bldg Auditorium 1102A | Charles Forsyth | Linux Basics and HPCC Cluster Introduction This workshop will cover topics including: * Connecting to the Cluster * Basic Linux commands * File systems * The cluster scheduler, Slurm * Cluster policies and best practices * Basic job submissions to the cluster * and others .. | HPCC Linux/Cluster Basics: Slides Files |
| April 5, 2019 2:00pm - 5:00pm | Genomics Bldg Auditorium 1102A | Charles Forsyth | Linux Basics and HPCC Cluster Introduction This workshop will cover topics including: * Connecting to the Cluster * Basic Linux commands * File systems * The cluster scheduler, Slurm * Cluster policies and best practices * Basic job submissions to the cluster * and others .. | HPCC Linux/Cluster Basics: Slides Files |
| February 15, 2019 2:00pm - 5:00pm | Genomics Bldg Auditorium 1102A | Charles Forsyth | HPCC Workshop - Linux Basics and HPCC Cluster Introduction This workshop will cover topics including: * Connecting to the Cluster * Basic Linux commands * File systems * The cluster scheduler, Slurm * Cluster policies and best practices * Basic job submissions to the cluster * and others .. | HPCC Linux/Cluster Basics: Slides Files |
| December 14, 2018 2:00pm - 5:00pm | Genomics Bldg Auditorium 1102A | Charles Forsyth | HPCC Workshop - Linux Basics and HPCC Cluster Introduction This workshop will cover topics including: * Connecting to the Cluster * Basic Linux commands * File systems * The cluster scheduler, Slurm * Cluster policies and best practices * Basic job submissions to the cluster * and others .. | HPCC Linux/Cluster Basics: Slides Files |
| November, 2, 2018 9:30pm - 4:30pm | Morning: HUB-355; Afternoon: HUB-268/269 | Amit Majumadar, Nicole Wolter, Mahidhar Tatineni, Robert Sinkovits, Paul Rodriguez, Mai Nguyen | San Diego Supercomputer Center Workshop: Workshop presented by staff from the San Diego Super Computer Center. The morning will provide general information and resources, and the afternoon will split into two parallel tracks (Data Science and Compute Intensive Tasks). | Agenda Slides & Tutorials |
| October 26, 2018 9:00pm - 12:00pm | Genomics Bldg Auditorium 1102A | Charles Forsyth, Jordan Hayes & Thomas Girke | Research Computing in UCR’s HPC Center: This event will provide an overview of the resources provided by UCR’s HPC Center along with a usage tutorial. This includes a seminar-style introduction to the center’s hardware and software resources, including usage statistics, training events, online tutorials and access options via subscription and/or ownership models. The introduction will be followed by a tutorial about the general usage of the infrastructure covering the following topics: (i) user accounts, (ii) big data storage and backups, (iii) software management, installs and containerization; (iv) queuing system; (v) web-based access options; and (vi) external alternatives including AWS and XSEDE. During the tutorial section participants are welcome to follow along on their laptops. Guest accounts will be provided to new users. | Agenda Intro Slides Tutorial Slides |
| October 18, 2018 1:00pm - 3:30pm | Genomics Bldg Auditorium 1102A | Charles Forsyth | HPCC Workshop - Introduction to Python This workshop will cover topics including: * What is Python * Logic Control * Functions and Classes * Simple Data/File Operations * Using Python in HPC Environments * Installing and Importing Python Modules * and others .. | Python Intro: Slides Files |
| October 4, 2018 1:00pm - 3:30pm | Genomics Bldg Auditorium 1102A | Charles Forsyth | HPCC Workshop - Linux Basics and HPCC Cluster Introduction This workshop will cover topics including: * Connecting to the Cluster * Basic Linux commands * File systems * The cluster scheduler, Slurm * Cluster policies and best practices * Basic job submissions to the cluster * and others .. | HPCC Linux/Cluster Basics: Slides Files |
| September 6, 2018 2:00pm - 5:00pm | Genomics Bldg Auditorium 1102A | Charles Forsyth & Jordan Hayes | HPCC Workshop - Basic Linux/Cluster Intro and Software Installation Part One: Basic Linux and Cluster Introduction Part Two: Installing software on the HPCC Cluster (Python, R, Perl, Basic Compiled Applications). | HPCC Linux/Cluster Basics: Slides Files Software Install: Slides Files |
| August 3, 2018 2:00pm - 5:00pm | Genomics Bldg Auditorium 1102A | Charles Forsyth & Jordan Hayes | HPCC Cluster (Biocluster) Intro Workshop Three part basic introdution to Linux and the HPCC Cluster along with a user interaction session. | Linux Basics: Slides Video HPCC Basics: Slides Files Video |
| June 15, 2018 1:00pm - 4:00pm | Genomics Bldg Auditorium 1102A | Charles Forsyth, Jordan Hayes & Thomas Girke | Introduction to HPCC Cluster I. Linux Basics; II. HPCC Cluster; III. How to work in R on HPC systems? | Linux Basics: Slides HPCC Basics: Slides Files R on HPCC: Slides |
| May 4, 2018 2:00pm - 5:00pm | Genomics Bldg Auditorium 1102A | Charles Forsyth & Jordan Hayes | HPCC Cluster (Biocluster) Intro Workshop Three part basic introdution to Linux and the HPCC Cluster along with a user interaction session. | Linux Basics: Slides Video HPCC Basics: Slides Video |
| April 27, 2018 2:00pm - 3:30pm | Genomics Bldg Auditorium 1102A | Thomas Girke | Annual PI and User Meeting of HPC Center Overview of services, hardware/software resources, usage stats, training and recharging. Followed by discussion of future directions. | Slides Agenda |
| April 5, 2018 1:00pm - 2:30pm | Genomics Bldg Auditorium 1102A | Charles Forsyth | HPCC Cloud Service Presentation Learn about the HPCC Cloud Service (beta). We will demonstrate how to use HPCC and Amazon Web Service (AWS) to quickly create an on-demand HPC Cluster private to you. We also explain important topics such as billing and cost control, cluster operation, types of clusters (GPU, Highmem, etc.), data management and more. | Slides |
| April 6, 2018 2:00pm - 5:00pm | Genomics Bldg Auditorium 1102A | Charles Forsyth & Jordan Hayes | HPCC Cluster (Biocluster) Intro Workshop Three part basic introdution to Linux and the HPCC Cluster along with a user interaction session. | Basic Linux HPCC Cluster Intro |
| March 9, 2018 2:00pm - 5:00pm | Genomics Bldg Auditorium 1102A | Charles Forsyth & Jordan Hayes | HPCC Cluster (Biocluster) Intro Workshop Three part basic introdution to Linux and the HPCC Cluster along with a user interaction session. | Basic Linux HPCC Cluster Intro |
| February 9, 2018 2:00pm - 5:00pm | Genomics Bldg Auditorium 1102A | Charles Forsyth & Jordan Hayes | HPCC Cluster (Biocluster) Intro Workshop Three part basic introdution to Linux and the HPCC Cluster along with a user interaction session. | Basic Linux HPCC Cluster Intro |
| December 14, 2017 10:00am - 12:00pm | Genomics Bldg Auditorium 1102A | Randy Ridgley - AWS Solutions Architect | Introduction to AWS for Research Introduction to AWS: Overview of Amazon Web Services (AWS), key concepts and terminology for compute, storage, database and networking. AWS for Researchers: With AWS scientists can deploy and test software, analyze their data, and share their results with collaborators around the world. This section will include a demonstration how to build HPC clusters in AWS using cfnCluster and AWSBatch. | |
| November 3, 2017 2:00pm - 5:00pm | Genomics Bldg Auditorium 1102A | Charles Forsyth & Jordan Hayes | HPCC Cluster (Biocluster) Intro Workshop Three part basic introdution to Linux and the HPCC Cluster along with a user interaction session. | Basic Linux HPCC Cluster Intro |
| October 11, 2017 2:00pm - 4:00pm | ULB 104 | Charles Forsyth | Linux, Scripting and HPCC Cluster Intro Workshop Introdution to Linux concepts basic bash scripting and HPCC Cluster intro focused on job submission. | Slides |
| September 1, 2017 2:00pm - 5:00pm | Genomics Bldg Auditorium 1102A | Charles Forsyth & Jordan Hayes | HPCC Cluster (Biocluster) Intro Workshop Three part basic introdution to Linux and the HPCC Cluster along with a user interaction session. | Basic Linux HPCC Cluster Intro |
| July 24, 2017 9:00am - 11:00am | Genomics Bldg Auditorium 1102A | Charles Forsyth | HPCC Cluster (Biocluster) Intro Workshop Basic introdution to the HPCC Cluster and Services. | |
| Jan 20, 2017 12:00pm - 2:00pm | Genomics Bldg 1208 | Jordan Hayes | Slurm and Basic Linux Q&A Job submissions, account managment and basic Linux scripting. | Examples |
Last modified April 19, 2024: Added agenda link to events (a7da7e5a2)