AlphaFold Usage on HPCC

1 minute read

AlphaFold2

Description of AlphaFold2

Loading the module

You can load AlphaFold2 using the following commands:

module load alphafold/
singularity shell $ALPHAFOLD_SING

You can also run AlphaFold2 with a gpu. If you wish to use a GPU, log into a gpu node and then use the following commands:

module load alphafold/
singularity shell --nv $ALPHAFOLD_SING

Using Alphafold Databases

When running the alphafold command, you will be asked for certain databases. These databases can be found under the path $DATABASE_DIR/alphafold.

Last modified October 12, 2022: Update alphafold.md (8bd25de27)